Supplemental Data from Epistatic interactions influence terrestrial-marine functional shifts in cetacean rhodopsin

Supplemental Tables 1-

RH2 nucleotide sequences

RH2 nucleotide sequence

Variation in Rh2 non-synonymous rates of evolution (dN ) across species in the main dataset

Gene tree for Rh2 where branch lengths are scaled by dN rate (substitutions per codon) estimated along that branch by a free-ratio model as implemented in PAM

RH2 amino acid aligment

Alignment of RH2 amino acid sequences - corresponds to figure S

Variation in Rh1 non-synonymous rates of evolution (dN ) across Passerines

Branch lengths are scaled by dN rates. Branch lengths were estimated using a free ratio model as implemented in PAML, that estimates independent dN rates for each branch in the tree

RH1 nucleotide sequences

RH1 nucleotide sequence

Time calibrated phylogeny of the New World warblers, Old World warblers and Bowerbirds used in this study.

Phylogeny shown in Fig. 1. Branch lengths are proportional to tim

Table S1 from The role of ecological factors in shaping bat cone opsin evolution

Species list, accession number and ecological classificatio

Table S8 from The role of ecological factors in shaping bat cone opsin evolution

Codon-based estimates of divergence between bat Lws and Sws1 sequence

Table S8 from The role of ecological factors in shaping bat cone opsin evolution

Codon-based estimates of divergence between bat Lws and Sws1 sequence